Welcome to metaFun

Welcome to metaFun#

#

metaFun : An analysis pipeline for metagenomic big data with fast and unified Functional searches#

metaFun is implemented in Nextflow with apptainer. You can easily run this pipeline with easy installation using conda or mamba. This package is deposited in Bioconda channel (https://anaconda.org/bioconda/metafun)

Introduction#

metaFun is aimed at agile and scalable generation of metagenome assembled genomes and taxonomic profiling with statistical analysis. Using user interested genomes with metadata, this pipeline enables fast comprative genomic analysis and functional annotation.

metafun_pipeline

Birdeye view of metaFun pipeline. This pipeline is comprised of six analytical modules and two interactive modules.#

Quick Start#

  1. Install Prerequisites (conda, miniconda, or mamba)

    # Install miniconda or mamba
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh

  2. Install metaFun

    # make  metafun environment
git clone https://github.com/aababc1/metaFun.git
cd metaFun

# Create environment
conda create -n metafun bioconda::metafun
conda activate metafun

  3. Download Databases

    (metafun)  metafun  -module DOWNLOAD_DB 
# get help 
(metafun)  metafun  -help

Getting Started

metaFun workflows

Contents